PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.380
Common NameAMTR_s00010p00254240, LOC18422432
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 93aa    MW: 10338.7 Da    PI: 8.5134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.380genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0720591554
                                              HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                              +i +  ++L++llP+ + + +s K+s + +L+++++YIksL
  evm_27.model.AmTr_v1.0_scaffold00010.380 20 QIIDLVSKLQSLLPEiR-NRSSDKVSASKVLQETCNYIKSL 59
                                              56677799*******77.89********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.467559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-82077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-92079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SGSSRITDDQ IIDLVSKLQS LLPEIRNRSS DKVSASKVLQ ETCNYIKSLH  60
REVDDLSEKL SELLETTETS SAQAAIIRSL LM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827167.11e-57PREDICTED: transcription factor ILI6
SwissprotQ9LJX16e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLW1NGR51e-57W1NGR5_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr2P07410_0011e-42(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-27bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]